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paf-1 1-alkyl-2-acetylglycerophosphocholine esterase [ Caenorhabditis elegans ]

Gene ID: 172120, updated on 2-Nov-2024

Summary

Official Symbol
paf-1
Official Full Name
1-alkyl-2-acetylglycerophosphocholine esterase
Primary source
WormBase:WBGene00003906
Locus tag
CELE_W03G9.6
See related
AllianceGenome:WB:WBGene00003906
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Enables 1-alkyl-2-acetylglycerophosphocholine esterase activity. Involved in lipid catabolic process. Predicted to be located in cytosol and endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in several diseases, including artery disease (multiple); glomerulonephritis (multiple); hemolytic-uremic syndrome; proteinuria (multiple); and type 2 diabetes mellitus. Orthologous to human PLA2G7 (phospholipase A2 group VII) and PAFAH2 (platelet activating factor acetylhydrolase 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See paf-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_003279.8 (4984718..4986739, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Sodium: Neurotransmitter symporter Family Neighboring gene Transmembrane protein Neighboring gene CILiary localization Neighboring gene Tetratricopeptide repeat protein 30 homolog

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables 1-alkyl-2-acetylglycerophosphocholine esterase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables 1-alkyl-2-acetylglycerophosphocholine esterase activity IDA
Inferred from Direct Assay
more info
PubMed 
enables 1-alkyl-2-acetylglycerophosphocholine esterase activity IEA
Inferred from Electronic Annotation
more info
 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in lipid catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in lipid catabolic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
located_in endoplasmic reticulum membrane ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
1-alkyl-2-acetylglycerophosphocholine esterase
NP_001379900.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    4984718..4986739 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392244.1NP_001379900.1  1-alkyl-2-acetylglycerophosphocholine esterase [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EGT1
    Conserved Domains (1) summary
    cl21494
    Location:4367
    Abhydrolase; alpha/beta hydrolases