ppw-2 Piwi domain-containing protein [Caenorhabditis elegans] - Gene

Summary

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Gene symbol: ppw-2
Gene description: Piwi domain-containing protein
Locus tag: CELE_Y110A7A.18
See related: AllianceGenome:WB:WBGene00004094
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable nucleic acid binding activity. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See ppw-2 in Genome Data Viewer

Location:: chromosome: I

Exon count:: 11

Sequence:: Chromosome: I; NC_003279.8 (5158511..5162232, complement)

Chromosome I - NC_003279.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Protease-mediated processing of Argonaute proteins controls small RNA association.
Title: Protease-mediated processing of Argonaute proteins controls small RNA association.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y110A7A.b (e-PCR)
- UniSTS:323440

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables RNA endonuclease activity	IBA Inferred from Biological aspect of Ancestor more info
enables miRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables single-stranded RNA binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in regulatory ncRNA-mediated post-transcriptional gene silencing	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of RISC complex	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
is_active_in cytoplasmic ribonucleoprotein granule	IBA Inferred from Biological aspect of Ancestor more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: Piwi domain-containing protein

NP_491535.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003279.8 Reference assembly

Range

5158511..5162232 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_059134.7 → NP_491535.1 Piwi domain-containing protein [Caenorhabditis elegans]

See identical proteins and their annotated locations for NP_491535.1

Status: REVIEWED

UniProtKB/TrEMBL

Q9N585

Conserved Domains (4) summary

smart00949
Location:334 → 461

PAZ; This domain is named PAZ after the proteins Piwi Argonaut and Zwille

PLN03202
Location:64 → 919

PLN03202; protein argonaute; Provisional

pfam02171
Location:604 → 934

Piwi; Piwi domain

pfam16486
Location:78 → 189

ArgoN; N-terminal domain of argonaute