U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

let-630 Small ribosomal subunit protein mS39 [ Caenorhabditis elegans ]

Gene ID: 172153, updated on 2-Nov-2024

Summary

Official Symbol
let-630
Official Full Name
Small ribosomal subunit protein mS39
Primary source
WormBase:WBGene00002804
Locus tag
CELE_Y110A7A.19
See related
AllianceGenome:WB:WBGene00002804
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable rRNA binding activity and ribosomal small subunit binding activity. Predicted to be involved in mitochondrial translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 51. Orthologous to human PTCD3 (pentatricopeptide repeat domain 3). [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See let-630 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (5162602..5164884, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene MATH domain-containing protein Neighboring gene Piwi domain-containing protein Neighboring gene Condensin-2 complex subunit hcp-6 Neighboring gene Spindle-defective protein 5 Neighboring gene Nuclear Pore complex Protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 
enables ribosomal small subunit binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ribosomal small subunit binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in mitochondrial translation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in mitochondrial translation IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Small ribosomal subunit protein mS39
NP_491536.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    5162602..5164884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059135.7NP_491536.2  Small ribosomal subunit protein mS39 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N584
    Conserved Domains (2) summary
    sd00004
    Location:214244
    PPR; PPR repeat [structural motif]
    pfam13812
    Location:267332
    PPR_3; Pentatricopeptide repeat domain