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Mcpt-ps1 mast cell protease, pseudogene 1 [ Mus musculus (house mouse) ]

Gene ID: 17223, updated on 22-Oct-2024

Summary

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Official Symbol
Mcpt-ps1provided by MGI
Official Full Name
mast cell protease, pseudogene 1provided by MGI
Primary source
MGI:MGI:102769
See related
Ensembl:ENSMUSG00000121428 AllianceGenome:MGI:102769
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mmcpy1; MMCP-(Y)1
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Mcpt-ps1 in Genome Data Viewer
Location:
14 C3; 14 28.19 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (56187266..56189828, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (55949809..55952371, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene KH and NYN domain containing Neighboring gene short chain dehydrogenase/reductase family 39U, member 1 Neighboring gene STARR-seq mESC enhancer starr_36786 Neighboring gene chymase 1, mast cell Neighboring gene chymase 2, mast cell Neighboring gene STARR-seq mESC enhancer starr_36788 Neighboring gene STARR-seq mESC enhancer starr_36789 Neighboring gene STARR-seq mESC enhancer starr_36790 Neighboring gene ubiquitin-conjugating enzyme E2, J2 homolog pseudogene Neighboring gene mast cell protease 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Genes for mast-cell serine protease and their molecular evolution. Huang R, et al. Immunogenetics, 1994. PMID 7959952
  2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

GeneRIFs: Gene References Into Functions

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_028284.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC163646, BY328253
    Related
    ENSMUST00000303580.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    56187266..56189828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_019904.1: Suppressed sequence

    Description
    NG_019904.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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