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npp-7 RanBP2-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 172234, updated on 2-Nov-2024

Summary

Official Symbol
npp-7
Official Full Name
RanBP2-type domain-containing protein
Primary source
WormBase:WBGene00003793
Locus tag
CELE_T19B4.2
See related
AllianceGenome:WB:WBGene00003793
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Involved in several processes, including determination of adult lifespan; nucleus organization; and regulation of exit from mitosis. Located in nuclear membrane. Part of nuclear pore. Orthologous to human POM121 (POM121 transmembrane nucleoporin) and POM121C (POM121 transmembrane nucleoporin C). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See npp-7 in Genome Data Viewer
Location:
chromosome: I
Exon count:
7
Sequence:
Chromosome: I; NC_003279.8 (5692264..5697500)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Mitochondrial import inner membrane translocase subunit TIM14 Neighboring gene Adenine phosphoribosyltransferase;adenine phosphoribosyltransferase Neighboring gene Netrin receptor unc-40 Neighboring gene putative peptidylglycine alpha-hydroxylating monooxygenase Neighboring gene ncRNA Neighboring gene ncRNA

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nuclear localization sequence binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in RNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in determination of adult lifespan IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in determination of adult lifespan IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in embryo development ending in birth or egg hatching IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in nucleus organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in regulation of exit from mitosis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in nuclear membrane IDA
Inferred from Direct Assay
more info
PubMed 
part_of nuclear pore IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of nuclear pore IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
RanBP2-type domain-containing protein
NP_001370374.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    5692264..5697500
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001383135.2NP_001370374.1  RanBP2-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    P91457
    Conserved Domains (2) summary
    smart00547
    Location:673696
    ZnF_RBZ; Zinc finger domain
    sd00029
    Location:674693
    zf-RanBP2; RanBP2-type Zn finger [structural motif]