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spch-3 SPerm CHromatin enriched [ Caenorhabditis elegans ]

Gene ID: 172293, updated on 2-Nov-2024

Summary

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Official Symbol
spch-3
Official Full Name
SPerm CHromatin enriched
Primary source
WormBase:WBGene00020840
Locus tag
CELE_T27A3.4
See related
AllianceGenome:WB:WBGene00020840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in chromatin. Is expressed in sperm. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See spch-3 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003279.8 (6098927..6099731)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Protein-tyrosine phosphatase Neighboring gene Nematode Specific Peptide family, group D Neighboring gene ncRNA Neighboring gene Protein-tyrosine phosphatase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. New allele of C. elegans gene spch-3 (T27A3.4), called xc2. Munoz NR, et al. MicroPubl Biol, 2018 May 1. PMID 32550380, Free PMC Article
  2. Sperm chromatin proteomics identifies evolutionarily conserved fertility factors. Chu DS, et al. Nature, 2006 Sep 7. PMID 16943775, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in chromatin IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SPerm CHromatin enriched
NP_491760.1
  • Product from WormBase gene class spch;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6098927..6099731
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059359.5 → NP_491760.1  SPerm CHromatin enriched [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491760.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    P91497
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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