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ssp-16 Sperm-specific class P protein 16 [ Caenorhabditis elegans ]

Gene ID: 172294, updated on 2-Nov-2024

Summary

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Official Symbol
ssp-16
Official Full Name
Sperm-specific class P protein 16
Primary source
WormBase:WBGene00006044
Locus tag
CELE_T27A3.3
See related
AllianceGenome:WB:WBGene00006044
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in male gonad. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ssp-16 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003279.8 (6102067..6102396)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Protein-tyrosine phosphatase Neighboring gene NADH dehydrogenase subunit 4L;Ovule protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole genome microarray analysis of C. elegans rrf-3 and eri-1 mutants. Asikainen S, et al. FEBS Lett, 2007 Oct 30. PMID 17919598
  2. MSP domain proteins show enhanced expression in male germ line cells. Tarr DE, et al. Mol Biochem Parasitol, 2004 Sep. PMID 15279955
  3. Requirement for the ERI/DICER complex in endogenous RNA interference and sperm development in Caenorhabditis elegans. Pavelec DM, et al. Genetics, 2009 Dec. PMID 19797044, Free PMC Article
  4. 26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans. Han T, et al. Proc Natl Acad Sci U S A, 2009 Nov 3. PMID 19846761, Free PMC Article
  5. Identification of innate immunity genes and pathways using a comparative genomics approach. Alper S, et al. Proc Natl Acad Sci U S A, 2008 May 13. PMID 18463287, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
Sperm-specific class P protein 16
NP_491762.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6102067..6102396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059361.8 → NP_491762.1  Sperm-specific class P protein 16 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491762.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P91499
    Conserved Domains (1) summary
    pfam00635
    Location:3 → 78
    Motile_Sperm; MSP (Major sperm protein) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P91499.1

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