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ctg-1 Protein ctg-1 [ Caenorhabditis elegans ]

Gene ID: 172431, updated on 2-Nov-2024

Summary

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Official Symbol
ctg-1
Official Full Name
Protein ctg-1
Primary source
WormBase:WBGene00010370
Locus tag
CELE_H06O01.3
See related
AllianceGenome:WB:WBGene00010370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in regulation of basement membrane organization. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to several human genes including SEC14L2 (SEC14 like lipid binding 2); SEC14L3 (SEC14 like lipid binding 3); and SEC14L4 (SEC14 like lipid binding 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ctg-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (7005443..7009200)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene AbLIM_anchor domain-containing protein Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene DNA helicase Neighboring gene ncRNA Neighboring gene Protein disulfide-isomerase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Boundary cells restrict dystroglycan trafficking to control basement membrane sliding during tissue remodeling. McClatchey ST, et al. Elife, 2016 Sep 23. PMID 27661254, Free PMC Article
  2. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226
  3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in regulation of basement membrane organization IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Protein ctg-1
NP_001263451.1
  • Confirmed by transcript evidence
NP_001263452.1
  • Confirmed by transcript evidence
NP_491993.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    7005443..7009200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059592.6 → NP_491993.1  Protein ctg-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491993.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    K8ES75, K8F7T8, O17907
    Conserved Domains (1) summary
    smart00516
    Location:73 → 244
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)

  2. NM_001276522.3 → NP_001263451.1  Protein ctg-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263451.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    K8ES75
    Conserved Domains (1) summary
    smart00516
    Location:13 → 149
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)

  3. NM_001276523.3 → NP_001263452.1  Protein ctg-1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263452.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    K8F7T8
    Conserved Domains (1) summary
    smart00516
    Location:1 → 100
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O17907.2

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