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T22C1.6 Transport and Golgi organization protein 1 homolog [ Caenorhabditis elegans ]

Gene ID: 172568, updated on 2-Nov-2024

Summary

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Official Symbol
T22C1.6
Official Full Name
Transport and Golgi organization protein 1 homolog
Primary source
WormBase:WBGene00011917
Locus tag
CELE_T22C1.6
See related
AllianceGenome:WB:WBGene00011917
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable syntaxin binding activity. Located in endoplasmic reticulum. Is expressed in several structures, including body wall musculature; head; non-striated muscle; pharynx; and tail. Orthologous to human TXLNA (taxilin alpha); TXLNB (taxilin beta); and TXLNG (taxilin gamma). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See T22C1.6 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_003279.8 (7942719..7945551)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene GPI transamidase component GAB1 Neighboring gene Ctf8 Neighboring gene TFIIIC_sub6 domain-containing protein Neighboring gene Junctophilin-1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
  2. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  3. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables syntaxin binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
Transport and Golgi organization protein 1 homolog
NP_001379147.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    7942719..7945551
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392625.1 → NP_001379147.1  Transport and Golgi organization protein 1 homolog [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22666
    Conserved Domains (1) summary
    pfam09728
    Location:18 → 321
    Taxilin; Myosin-like coiled-coil protein
Nucleotide Protein
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