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slc-25A42 Mitochondrial coenzyme A transporter SLC25A42 [ Caenorhabditis elegans ]

Gene ID: 172656, updated on 2-Nov-2024

Summary

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Official Symbol
slc-25A42
Official Full Name
Mitochondrial coenzyme A transporter SLC25A42
Primary source
WormBase:WBGene00009666
Locus tag
CELE_F43G9.3
See related
AllianceGenome:WB:WBGene00009666
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Is expressed in body wall musculature; head; intestine; and pharynx. Orthologous to human SLC25A42 (solute carrier family 25 member 42). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See slc-25A42 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (8612725..8615193, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene LysM domain-containing protein Neighboring gene PWWP domain-containing protein Neighboring gene Cleavage and polyadenylation specificity factor subunit 5 Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Axon guidance genes identified in a large-scale RNAi screen using the RNAi-hypersensitive Caenorhabditis elegans strain nre-1(hd20) lin-15b(hd126). Schmitz C, et al. Proc Natl Acad Sci U S A, 2007 Jan 16. PMID 17213328, Free PMC Article
  2. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Mitochondrial coenzyme A transporter SLC25A42
NP_492333.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    8612725..8615193 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059932.5 → NP_492333.1  Mitochondrial coenzyme A transporter SLC25A42 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492333.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q93717
    Conserved Domains (2) summary
    PTZ00169
    Location:8 → 271
    PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional
    pfam00153
    Location:10 → 100
    Mito_carr; Mitochondrial carrier protein
Nucleotide Protein
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