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F39H11.1 Craniofacial development protein 1 [ Caenorhabditis elegans ]

Gene ID: 172675, updated on 2-Nov-2024

Summary

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Official Symbol
F39H11.1
Official Full Name
Craniofacial development protein 1
Primary source
WormBase:WBGene00009565
Locus tag
CELE_F39H11.1
See related
AllianceGenome:WB:WBGene00009565
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in body wall musculature; intestine; pharynx; and reproductive system. Orthologous to human CFDP1 (craniofacial development protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F39H11.1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (8696603..8697596)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene MBD domain-containing protein;Pre-mRNA-splicing factor SLU7;Pre-mRNA-splicing factor SYF2 Neighboring gene putative ATP synthase subunit g 1, mitochondrial Neighboring gene Proteasome subunit beta Neighboring gene TATA box-binding protein-like 1 Neighboring gene Cyclin-dependent kinase 8 Neighboring gene Collagen alpha-1(XVIII) chain;Endostatin domain-containing protein;Fibronectin type-III domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline. Walhout AJ, et al. Curr Biol, 2002 Nov 19. PMID 12445390
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Craniofacial development protein 1
NP_492355.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    8696603..8697596
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059954.8 → NP_492355.1  Craniofacial development protein 1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492355.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    P90867
    Conserved Domains (1) summary
    pfam07572
    Location:146 → 215
    BCNT; Bucentaur or craniofacial development
Nucleotide Protein
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