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cids-2 CID domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 172691, updated on 2-Nov-2024

Summary

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Official Symbol
cids-2
Official Full Name
CID domain-containing protein
Primary source
WormBase:WBGene00009451
Locus tag
CELE_F36A2.1
See related
AllianceGenome:WB:WBGene00009451
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA polymerase II complex binding activity. Involved in mRNA 3'-end processing. Orthologous to human RPRD2 (regulation of nuclear pre-mRNA domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cids-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
13
Sequence:
Chromosome: I; NC_003279.8 (8804799..8808081, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Disintegrin and metalloproteinase domain-containing protein 10 homolog Neighboring gene Malate dehydrogenase Neighboring gene tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] Neighboring gene 14 kDa phosphohistidine phosphatase-like Neighboring gene Fibronectin type-III domain-containing protein Neighboring gene Cytochrome c oxidase subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rhn1, a nuclear protein, is required for suppression of meiotic mRNAs in mitotically dividing fission yeast. Sugiyama T, et al. PLoS One, 2012. PMID 22912768, Free PMC Article
  2. Nuclear pre-mRNA 3'-end processing regulates synapse and axon development in C. elegans. Van Epps H, et al. Development, 2010 Jul. PMID 20530551, Free PMC Article
  3. Genes involved in pre-mRNA 3'-end formation and transcription termination revealed by a lin-15 operon Muv suppressor screen. Cui M, et al. Proc Natl Acad Sci U S A, 2008 Oct 28. PMID 18946043, Free PMC Article
  4. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
  5. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA polymerase II complex binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mRNA 3'-end processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
CID domain-containing protein
NP_001122471.1
  • Confirmed by transcript evidence
NP_001122472.1
  • Confirmed by transcript evidence
NP_492380.2
  • Confirmed by transcript evidence
NP_871883.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    8804799..8808081 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059979.6 → NP_492380.2  CID domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492380.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XVN9
    Conserved Domains (2) summary
    smart00582
    Location:5 → 133
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    PHA03247
    Location:369 → 553
    PHA03247; large tegument protein UL36; Provisional

  2. NM_001128999.4 → NP_001122471.1  CID domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122471.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5Z2V0
    Conserved Domains (2) summary
    smart00582
    Location:5 → 132
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    PHA03247
    Location:373 → 557
    PHA03247; large tegument protein UL36; Provisional

  3. NM_001129000.5 → NP_001122472.1  CID domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001122472.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5Z2V1
    Conserved Domains (2) summary
    smart00582
    Location:20 → 134
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    PHA03247
    Location:375 → 559
    PHA03247; large tegument protein UL36; Provisional

  4. NM_182083.7 → NP_871883.2  CID domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_871883.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8I4J5
    Conserved Domains (2) summary
    smart00582
    Location:5 → 132
    RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA
    PHA03247
    Location:367 → 551
    PHA03247; large tegument protein UL36; Provisional

RNA

  1. NR_023944.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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