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F53B6.4 Major sperm protein [ Caenorhabditis elegans ]

Gene ID: 172709, updated on 2-Nov-2024

Summary

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Official Symbol
F53B6.4
Official Full Name
Major sperm protein
Primary source
WormBase:WBGene00009959
Locus tag
CELE_F53B6.4
See related
AllianceGenome:WB:WBGene00009959
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in cytoskeleton and membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F53B6.4 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (8947304..8948711, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Fungus-Induced Protein Neighboring gene FIP (Fungus-Induced Protein) Related Neighboring gene O-fucosyltransferase family protein Neighboring gene Elf-1_N domain-containing protein Neighboring gene Peptidase_M24 domain-containing protein Neighboring gene tRNA-Lys Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Roles for the RNA polymerase III regulator MAFR-1 in regulating sperm quality in Caenorhabditis elegans. Hammerquist AM, et al. Sci Rep, 2020 Nov 9. PMID 33168938, Free PMC Article
  2. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Major sperm protein
NP_001250938.1
  • Partially confirmed by transcript evidence
NP_001380117.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    8947304..8948711 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001264009.2 → NP_001250938.1  Major sperm protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001250938.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XVN1
    Conserved Domains (1) summary
    pfam00635
    Location:236 → 333
    Motile_Sperm; MSP (Major sperm protein) domain

  2. NM_001392737.1 → NP_001380117.1  Major sperm protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    I2HA90
    Conserved Domains (1) summary
    pfam00635
    Location:194 → 291
    Motile_Sperm; MSP (Major sperm protein) domain
Nucleotide Protein
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