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skr-2 Skp1-related protein [ Caenorhabditis elegans ]

Gene ID: 172773, updated on 2-Nov-2024

Summary

Official Symbol
skr-2
Official Full Name
Skp1-related protein
Primary source
WormBase:WBGene00004808
Locus tag
CELE_F46A9.4
See related
AllianceGenome:WB:WBGene00004808
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable cullin family protein binding activity. Involved in several processes, including establishment of mitotic spindle orientation; negative regulation of centrosome duplication; and regulation of protein stability. Part of SCF ubiquitin ligase complex. Is expressed in intestine. Orthologous to human SKP1 (S-phase kinase associated protein 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See skr-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (9469654..9470637)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene MATH (Meprin-associated Traf homology) domain containing Neighboring gene Potassium channel domain-containing protein Neighboring gene Skp1-related protein Neighboring gene EF-hand domain-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables cullin family protein binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IPI
Inferred from Physical Interaction
more info
PubMed 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
Skp1-related protein
NP_492512.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    9469654..9470637
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060111.7NP_492512.1  Skp1-related protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492512.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EDD8
    Conserved Domains (3) summary
    smart00512
    Location:16124
    Skp1; Found in Skp1 protein family
    COG5201
    Location:16174
    SKP1; SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
    pfam01466
    Location:99172
    Skp1; Skp1 family, dimerization domain