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clec-87 C-type lectin domain-containing protein 87 [ Caenorhabditis elegans ]

Gene ID: 172885, updated on 2-Nov-2024

Summary

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Official Symbol
clec-87
Official Full Name
C-type lectin domain-containing protein 87
Primary source
WormBase:WBGene00007709
Locus tag
CELE_C25A1.8
See related
AllianceGenome:WB:WBGene00007709
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable carbohydrate binding activity and pattern recognition receptor activity. Predicted to be involved in immune response. Predicted to be active in external side of plasma membrane. Orthologous to human CLEC2L (C-type lectin domain family 2 member L); KLRB1 (killer cell lectin like receptor B1); and KLRG1 (killer cell lectin like receptor G1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See clec-87 in Genome Data Viewer
Location:
chromosome: I
Exon count:
3
Sequence:
Chromosome: I; NC_003279.8 (10184462..10185520, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene Putative H/ACA ribonucleoprotein complex subunit 3 Neighboring gene Proteasome assembly chaperone 3 Neighboring gene isoleucine--tRNA ligase Neighboring gene Serine/threonine-protein phosphatase 2A regulatory subunit rsa-1 Neighboring gene Nucleolar protein dao-5 Neighboring gene AB hydrolase-1 domain-containing protein;Abhydrolase domain-containing protein lid-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Establishment of a Caenorhabditis elegans infection model for Vibrio alginolyticus. Durai S, et al. J Basic Microbiol, 2011 Jun. PMID 21298688
  2. Caenorhabditis elegans as a model for studying Cronobacter sakazakii ATCC BAA-894 pathogenesis. Sivamaruthi BS, et al. J Basic Microbiol, 2011 Oct. PMID 21656805
  3. Regulation of Caenorhabditis elegans and Pseudomonas aeruginosa machinery during interactions. Vigneshkumar B, et al. Arch Microbiol, 2012 Apr. PMID 21909805
  4. Changes in Caenorhabditis elegans exposed to Vibrio parahaemolyticus. Durai S, et al. J Microbiol Biotechnol, 2011 Oct. PMID 22031026
  5. Characterizing the type 6 secretion system (T6SS) of E. cloacae SBP-8 and its role in pathogenesis and bacterial competition. Khan S, et al. Microb Pathog, 2023 Oct. PMID 37536636

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables carbohydrate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
enables pattern recognition receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
C-type lectin domain-containing protein 87
NP_492682.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    10184462..10185520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060281.6 → NP_492682.1  C-type lectin domain-containing protein 87 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492682.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9XVS3
    Conserved Domains (1) summary
    pfam00059
    Location:107 → 224
    Lectin_C; Lectin C-type domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9XVS3.1

Gene LinkOut

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