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vet-2 Very Early Transcript [ Caenorhabditis elegans ]

Gene ID: 172993, updated on 2-Nov-2024

Summary

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Official Symbol
vet-2
Official Full Name
Very Early Transcript
Primary source
WormBase:WBGene00016453
Locus tag
CELE_C35E7.1
See related
AllianceGenome:WB:WBGene00016453
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in autophagy. Located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See vet-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
6
Sequence:
Chromosome: I; NC_003279.8 (10846772..10850103)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Reverse transcriptase domain-containing protein Neighboring gene Glutamic acid-rich protein-like Neighboring gene ncRNA Neighboring gene Saposin B-type domain-containing protein Neighboring gene Signal recognition particle-docking protein FtsY

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SEPA-1 mediates the specific recognition and degradation of P granule components by autophagy in C. elegans. Zhang Y, et al. Cell, 2009 Jan 23. PMID 19167332
  2. Repression of gene expression in the embryonic germ lineage of C. elegans. Seydoux G, et al. Nature, 1996 Aug 22. PMID 8751441
  3. DEPS-1 is required for piRNA-dependent silencing and PIWI condensate organisation in Caenorhabditis elegans. Suen KM, et al. Nat Commun, 2020 Aug 25. PMID 32843637, Free PMC Article
  4. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
  5. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Very Early Transcript
NP_001251515.2
  • Product from WormBase gene class vet;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    10846772..10850103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001264586.7 → NP_001251515.2  Very Early Transcript [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001251515.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    O61775
Nucleotide Protein
Heading Accession and Version

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