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ssp-37 MSP domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173127, updated on 2-Nov-2024

Summary

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Official Symbol
ssp-37
Official Full Name
MSP domain-containing protein
Primary source
WormBase:WBGene00012211
Locus tag
CELE_W02D9.5
See related
AllianceGenome:WB:WBGene00012211
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in defense response to Gram-negative bacterium. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ssp-37 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003279.8 (12561040..12561560, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Secreted protein Neighboring gene Coordinator of PRMT5 and differentiation stimulator Neighboring gene Uncharacterized protein Neighboring gene Uncharacterized protein Neighboring gene Mitogen-activated protein kinase kinase kinase dlk-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nematode Peptides with Host-Directed Anti-inflammatory Activity Rescue Caenorhabditis elegans from a Burkholderia pseudomallei Infection. Lim MP, et al. Front Microbiol, 2016. PMID 27672387, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in defense response to Gram-negative bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
MSP domain-containing protein
NP_493185.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    12561040..12561560 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060784.5 → NP_493185.1  MSP domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493185.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XVH1
    Conserved Domains (1) summary
    cl27657
    Location:26 → 80
    Motile_Sperm; MSP (Major sperm protein) domain
Nucleotide Protein
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