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vet-6 Very Early Transcript [ Caenorhabditis elegans ]

Gene ID: 173191, updated on 2-Nov-2024

Summary

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Official Symbol
vet-6
Official Full Name
Very Early Transcript
Primary source
WormBase:WBGene00006902
Locus tag
CELE_F44F1.7
See related
AllianceGenome:WB:WBGene00006902
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in gastrulation. Located in cytoplasm. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See vet-6 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (13269984..13272781)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ig-like domain-containing protein;PH_RBD domain-containing protein Neighboring gene SKICH domain-containing protein Neighboring gene pseudo Neighboring gene Mitochondrial ribosome-associated GTPase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Onset of C. elegans gastrulation is blocked by inhibition of embryonic transcription with an RNA polymerase antisense RNA. Powell-Coffman JA, et al. Dev Biol, 1996 Sep 15. PMID 8812143
  2. SEPA-1 mediates the specific recognition and degradation of P granule components by autophagy in C. elegans. Zhang Y, et al. Cell, 2009 Jan 23. PMID 19167332
  3. Repression of gene expression in the embryonic germ lineage of C. elegans. Seydoux G, et al. Nature, 1996 Aug 22. PMID 8751441
  4. Autophagy of germ-granule components, PGL-1 and PGL-3, contributes to DNA damage-induced germ cell apoptosis in C. elegans. Min H, et al. PLoS Genet, 2019 May. PMID 31125345, Free PMC Article
  5. Overcoming redundancy: an RNAi enhancer screen for morphogenesis genes in Caenorhabditis elegans. Sawyer JM, et al. Genetics, 2011 Jul. PMID 21527776, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
  
involved_in gastrulation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Very Early Transcript
NP_493332.1
  • Product from WormBase gene class vet;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    13269984..13272781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060931.9 → NP_493332.1  Very Early Transcript [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493332.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EEK5
Nucleotide Protein
Heading Accession and Version

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