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Y54E5A.5 Polysaccharide biosynthesis domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173330, updated on 2-Nov-2024

Summary

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Official Symbol
Y54E5A.5
Official Full Name
Polysaccharide biosynthesis domain-containing protein
Primary source
WormBase:WBGene00013200
Locus tag
CELE_Y54E5A.5
See related
AllianceGenome:WB:WBGene00013200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Located in sarcoplasmic reticulum. Orthologous to human PBDC1 (polysaccharide biosynthesis domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y54E5A.5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
2
Sequence:
Chromosome: I; NC_003279.8 (14707059..14707875, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Recep_L_domain domain-containing protein Neighboring gene Nucleoporin p58/p45 Neighboring gene DRBM domain-containing protein Neighboring gene B30.2/SPRY domain-containing protein;CTLH domain-containing protein Neighboring gene Conserved plasma membrane protein;Pyridoxamine 5'-phosphate oxidase;Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
  2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in sarcoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
Polysaccharide biosynthesis domain-containing protein
NP_493553.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    14707059..14707875 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_061152.6 → NP_493553.1  Polysaccharide biosynthesis domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493553.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWK2
    Conserved Domains (1) summary
    pfam04669
    Location:16 → 137
    Polysacc_synt_4; Polysaccharide biosynthesis
Nucleotide Protein
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