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Y54E5B.2 WD_REPEATS_REGION domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173352, updated on 2-Nov-2024

Summary

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Official Symbol
Y54E5B.2
Official Full Name
WD_REPEATS_REGION domain-containing protein
Primary source
WormBase:WBGene00013204
Locus tag
CELE_Y54E5B.2
See related
AllianceGenome:WB:WBGene00013204
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable snoRNA binding activity. Predicted to be part of small-subunit processome. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y54E5B.2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
10
Sequence:
Chromosome: I; NC_003279.8 (14815656..14820235, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene BLOC-1-related complex subunit 8 homolog Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Sema domain-containing protein;Semaphorin-1A Neighboring gene Mediator of RNA polymerase II transcription subunit 7 Neighboring gene Ubiquitin-conjugating enzyme E2 W

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
  
enables snoRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
WD_REPEATS_REGION domain-containing protein
NP_493584.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    14815656..14820235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_061183.6 → NP_493584.1  WD_REPEATS_REGION domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493584.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWF9
    Conserved Domains (2) summary
    sd00039
    Location:186 → 224
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:112 → 209
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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