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B0454.6 Cationic amino acid transporter C-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173650, updated on 2-Nov-2024

Summary

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Official Symbol
B0454.6
Official Full Name
Cationic amino acid transporter C-terminal domain-containing protein
Primary source
WormBase:WBGene00015197
Locus tag
CELE_B0454.6
See related
AllianceGenome:WB:WBGene00015197
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable amino acid transmembrane transporter activity. Predicted to be involved in amino acid transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC7A4 (solute carrier family 7 member 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See B0454.6 in Genome Data Viewer
Location:
chromosome: II
Exon count:
9
Sequence:
Chromosome: II; NC_003280.10 (3032780..3036122)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene AT-rich interactive domain-containing protein 2;STI1 domain-containing protein Neighboring gene C-type LECtin Neighboring gene C-type LECtin Neighboring gene ncRNA Neighboring gene TransThyretin-Related family domain Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables amino acid transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in amino acid transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in amino acid transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Cationic amino acid transporter C-terminal domain-containing protein
NP_494428.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    3032780..3036122
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062027.7 → NP_494428.1  Cationic amino acid transporter C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494428.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O17167
    Conserved Domains (1) summary
    TIGR00906
    Location:7 → 559
    2A0303; cationic amino acid transport permease
Nucleotide Protein
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