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fbxc-50 F-box domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173669, updated on 2-Nov-2024

Summary

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Official Symbol
fbxc-50
Official Full Name
F-box domain-containing protein
Primary source
WormBase:WBGene00015912
Locus tag
CELE_C17F4.5
See related
AllianceGenome:WB:WBGene00015912
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in germ line. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See fbxc-50 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003280.10 (3246316..3248123, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Uncharacterized protein Neighboring gene MD-2-related lipid-recognition domain-containing protein Neighboring gene Neuropeptide-Like Protein Neighboring gene ncRNA Neighboring gene C-type lectin domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The F-box protein family. Kipreos ET, et al. Genome Biol, 2000. PMID 11178263, Free PMC Article
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
F-box domain-containing protein
NP_494488.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    3246316..3248123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062087.5 → NP_494488.1  F-box domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494488.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O16541
    Conserved Domains (2) summary
    pfam00646
    Location:10 → 54
    F-box; F-box domain
    pfam12078
    Location:90 → 248
    DUF3557; Domain of unknown function (DUF3557)
Nucleotide Protein
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