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pho-4 intestinal acid PHOsphatase [ Caenorhabditis elegans ]

Gene ID: 173897, updated on 2-Nov-2024

Summary

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Official Symbol
pho-4
Official Full Name
intestinal acid PHOsphatase
Primary source
WormBase:WBGene00004023
Locus tag
CELE_T16D1.2
See related
AllianceGenome:WB:WBGene00004023
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable phosphatase activity. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pho-4 in Genome Data Viewer
Location:
chromosome: II
Exon count:
10
Sequence:
Chromosome: II; NC_003280.10 (5236257..5238466, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Ribosome biogenesis GTPase RsgA Neighboring gene DDE_Tnp_ISL3 domain-containing protein Neighboring gene Intestinal acid phosphatase Neighboring gene ncRNA Neighboring gene tRNA-Ile Neighboring gene DUF19 domain-containing protein Neighboring gene SSD domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
intestinal acid PHOsphatase
NP_494984.5
  • Product from WormBase gene class pho;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5236257..5238466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062583.8 → NP_494984.5  intestinal acid PHOsphatase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494984.5

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22525
    Conserved Domains (1) summary
    pfam00328
    Location:28 → 375
    His_Phos_2; Histidine phosphatase superfamily (branch 2)
Nucleotide Protein
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