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mdt-26 TFIIS N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173960, updated on 2-Nov-2024

Summary

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Official Symbol
mdt-26
Official Full Name
TFIIS N-terminal domain-containing protein
Primary source
WormBase:WBGene00016115
Locus tag
CELE_C25H3.6
See related
AllianceGenome:WB:WBGene00016115
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in nucleus. Orthologous to human TCEANC2 (transcription elongation factor A N-terminal and central domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See mdt-26 in Genome Data Viewer
Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (5661181..5665243)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Alpha-(1,3)-fucosyltransferase fut-3 Neighboring gene Intraflagellar transport protein 43 homolog Neighboring gene Secreted protein Neighboring gene Sensor histidine kinase Neighboring gene GST_C_6 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A transcriptional cofactor regulatory network for the C. elegans intestine. Horowitz BB, et al. G3 (Bethesda), 2023 Jul 5. PMID 37119809, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
TFIIS N-terminal domain-containing protein
NP_740996.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5661181..5665243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_170997.5 → NP_740996.2  TFIIS N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_740996.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYV0
    Conserved Domains (1) summary
    cl00146
    Location:30 → 102
    TFIIS_I; N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme

RNA

  1. NR_151553.1 RNA Sequence

    Status: REVIEWED

  2. NR_151552.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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