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rfip-1 FIP-RBD domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173998, updated on 2-Nov-2024

Summary

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Official Symbol
rfip-1
Official Full Name
FIP-RBD domain-containing protein
Primary source
WormBase:WBGene00018869
Locus tag
CELE_F55C12.1
See related
AllianceGenome:WB:WBGene00018869
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in endocytic recycling and regulation of cytokinesis. Predicted to be located in endosome and membrane. Predicted to be active in cleavage furrow; cytoplasmic vesicle; and midbody. Is expressed in several structures, including excretory canal; head neurons; intestine; pharynx; and tail neurons. Orthologous to human RAB11FIP3 (RAB11 family interacting protein 3) and RAB11FIP4 (RAB11 family interacting protein 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rfip-1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (5884552..5892227)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene LisH domain-containing protein;VQ domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Hox Genes Promote Neuronal Subtype Diversification through Posterior Induction in Caenorhabditis elegans. Zheng C, et al. Neuron, 2015 Nov 4. PMID 26539892, Free PMC Article
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in endocytic recycling IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in regulation of cytokinesis IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cleavage furrow IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cleavage furrow IEA
Inferred from Electronic Annotation
more info
  
is_active_in endocytic vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in midbody IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in midbody IEA
Inferred from Electronic Annotation
more info
  
is_active_in recycling endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in recycling endosome membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
FIP-RBD domain-containing protein
NP_001367895.1
  • Confirmed by transcript evidence
NP_001367896.1
  • Confirmed by transcript evidence
NP_495175.1
  • Confirmed by transcript evidence
NP_872036.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5884552..5892227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001381439.3 → NP_001367895.1  FIP-RBD domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q20813
    Conserved Domains (2) summary
    COG1196
    Location:43 → 265
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam09457
    Location:294 → 330
    RBD-FIP; FIP domain

  2. NM_001381438.1 → NP_001367896.1  FIP-RBD domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IG15
    Conserved Domains (2) summary
    COG1196
    Location:57 → 279
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam09457
    Location:308 → 344
    RBD-FIP; FIP domain

  3. NM_182236.5 → NP_872036.1  FIP-RBD domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_872036.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8IG14
    Conserved Domains (2) summary
    COG1196
    Location:8 → 237
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam09457
    Location:256 → 292
    RBD-FIP; FIP domain

  4. NM_062774.5 → NP_495175.1  FIP-RBD domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495175.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95ZS6
    Conserved Domains (2) summary
    COG1196
    Location:60 → 282
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam09457
    Location:311 → 347
    RBD-FIP; FIP domain

RNA

  1. NR_151563.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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