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F59G1.4 LisH domain-containing protein;VQ domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173999, updated on 2-Nov-2024

Summary

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Official Symbol
F59G1.4
Official Full Name
LisH domain-containing protein;VQ domain-containing protein
Primary source
WormBase:WBGene00019128
Locus tag
CELE_F59G1.4
See related
AllianceGenome:WB:WBGene00019128
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in cilium assembly. Predicted to be active in centriole; ciliary basal body; and ciliary tip. Is expressed in amphid neurons; head ganglion; inner labial neurons; and phasmid neurons. Human ortholog(s) of this gene implicated in Joubert syndrome 30. Orthologous to human ARMC9 (armadillo repeat containing 9). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See F59G1.4 in Genome Data Viewer
Location:
chromosome: II
Exon count:
13
Sequence:
Chromosome: II; NC_003280.10 (5896170..5904594)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene FIP-RBD domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene TetraSPanin family Neighboring gene Uncharacterized protein Neighboring gene Vacuolar protein sorting-associated protein 35

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in cilium assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in centriole IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in ciliary basal body IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in ciliary basal body IEA
Inferred from Electronic Annotation
more info
  
is_active_in ciliary tip IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
LisH domain-containing protein;VQ domain-containing protein
NP_001293471.1
  • Confirmed by transcript evidence
NP_495177.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    5896170..5904594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062776.5 → NP_495177.2  LisH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495177.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ECV5

  2. NM_001306542.3 → NP_001293471.1  VQ domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293471.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    V6CM02
Nucleotide Protein
Heading Accession and Version

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