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C30B5.2 Vacuolar protein sorting-associated protein 55 homolog [ Caenorhabditis elegans ]

Gene ID: 174028, updated on 2-Nov-2024

Summary

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Official Symbol
C30B5.2
Official Full Name
Vacuolar protein sorting-associated protein 55 homolog
Primary source
WormBase:WBGene00016244
Locus tag
CELE_C30B5.2
See related
AllianceGenome:WB:WBGene00016244
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to be located in endosome membrane. Predicted to be active in endosome. Orthologous to human LEPROT (leptin receptor overlapping transcript) and LEPROTL1 (leptin receptor overlapping transcript like 1). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C30B5.2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003280.10 (6197180..6198308)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Cytoplasmic polyadenylation element-binding protein 2 Neighboring gene RRM domain-containing protein Neighboring gene Suppressor of ZYg-1 Neighboring gene Kringle domain-containing protein Neighboring gene G-protein coupled receptor daf-37 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in late endosome to vacuole transport via multivesicular body sorting pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in endosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in endosome IEA
Inferred from Electronic Annotation
more info
  
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Vacuolar protein sorting-associated protein 55 homolog
NP_001379744.1
  • Confirmed by transcript evidence
NP_495238.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6197180..6198308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062837.8 → NP_495238.2  Vacuolar protein sorting-associated protein 55 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495238.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q18319, Q7JPI9, Q7JPJ0, Q95QS8
    Conserved Domains (1) summary
    pfam04133
    Location:7 → 123
    Vps55; Vacuolar protein sorting 55

  2. NM_001393094.1 → NP_001379744.1  Vacuolar protein sorting-associated protein 55 homolog [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    pfam04133
    Location:7 → 121
    Vps55; Vacuolar protein sorting 55
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q18319.3

Gene LinkOut

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