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C32D5.10 putative RING finger protein C32D5.10 [ Caenorhabditis elegans ]

Gene ID: 174051, updated on 2-Nov-2024

Summary

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Official Symbol
C32D5.10
Official Full Name
putative RING finger protein C32D5.10
Primary source
WormBase:WBGene00016317
Locus tag
CELE_C32D5.10
See related
AllianceGenome:WB:WBGene00016317
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein autoubiquitination. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C32D5.10 in Genome Data Viewer
Location:
chromosome: II
Exon count:
11
Sequence:
Chromosome: II; NC_003280.10 (6349207..6351987, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene protein-disulfide reductase Neighboring gene transcellular chaperone signaling (x)cross tissue Neighboring gene Protein lgg-1 Neighboring gene RING-type E3 ubiquitin transferase Neighboring gene 3-beta hydroxysteroid dehydrogenase/isomerase domain-containing protein Neighboring gene tRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Ceron J, et al. BMC Dev Biol, 2007 Apr 6. PMID 17417969, Free PMC Article
  2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein autoubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative RING finger protein C32D5.10
NP_495278.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6349207..6351987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062877.8 → NP_495278.2  putative RING finger protein C32D5.10 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495278.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q09268
    Conserved Domains (1) summary
    cd00162
    Location:41 → 85
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q09268.2

Gene LinkOut

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