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lron-15 Chaoptin [ Caenorhabditis elegans ]

Gene ID: 174079, updated on 2-Nov-2024

Summary

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Official Symbol
lron-15
Official Full Name
Chaoptin
Primary source
WormBase:WBGene00016974
Locus tag
CELE_C56E6.6
See related
AllianceGenome:WB:WBGene00016974
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in cell development. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See lron-15 in Genome Data Viewer
Location:
chromosome: II
Exon count:
17
Sequence:
Chromosome: II; NC_003280.10 (6540195..6544892, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ABC transporter family G domain-containing protein Neighboring gene ncRNA Neighboring gene DRIM domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in cell development IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Chaoptin
NP_495322.3
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6540195..6544892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062921.6 → NP_495322.3  Chaoptin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495322.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18902
    Conserved Domains (5) summary
    cd00116
    Location:607 → 799
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:726 → 739
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:433 → 462
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:510 → 551
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:583 → 642
    LRR_8; Leucine rich repeat
Nucleotide Protein
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