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C56C10.7 putative trafficking protein particle complex subunit 13 homolog [ Caenorhabditis elegans ]

Gene ID: 174089, updated on 2-Nov-2024

Summary

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Official Symbol
C56C10.7
Official Full Name
putative trafficking protein particle complex subunit 13 homolog
Primary source
WormBase:WBGene00016964
Locus tag
CELE_C56C10.7
See related
AllianceGenome:WB:WBGene00016964
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be part of TRAPPIII protein complex. Orthologous to human TRAPPC13 (trafficking protein particle complex subunit 13). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C56C10.7 in Genome Data Viewer
Location:
chromosome: II
Exon count:
11
Sequence:
Chromosome: II; NC_003280.10 (6584410..6587575, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serpentine receptor class alpha-31 Neighboring gene Protein kinase domain-containing protein Neighboring gene protein of unknown function DB domain-containing protein Neighboring gene Transcription factor BTF3 homolog Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome. Davy A, et al. EMBO Rep, 2001 Sep. PMID 11559592, Free PMC Article
  2. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
part_of TRAPPIII protein complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
putative trafficking protein particle complex subunit 13 homolog
NP_001348647.1
  • Confirmed by transcript evidence
NP_001379835.1
  • Confirmed by transcript evidence
NP_741009.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    6584410..6587575 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001361861.3 → NP_001348647.1  putative trafficking protein particle complex subunit 13 homolog [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    pfam06159
    Location:67 → 285
    DUF974; Protein of unknown function (DUF974)

  2. NM_171009.8 → NP_741009.1  putative trafficking protein particle complex subunit 13 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_741009.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B2MZA6, Q95QQ2, Q95QQ3
    Conserved Domains (1) summary
    pfam06159
    Location:67 → 287
    DUF974; Protein of unknown function (DUF974)

  3. NM_001393102.1 → NP_001379835.1  putative trafficking protein particle complex subunit 13 homolog [Caenorhabditis elegans]

    Status: REVIEWED

    Conserved Domains (1) summary
    pfam06159
    Location:1 → 130
    DUF974; Protein of unknown function (DUF974)

RNA

  1. NR_155256.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q95QQ2.1

Gene LinkOut

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