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col-36 Cuticle collagen 36 [ Caenorhabditis elegans ]

Gene ID: 174178, updated on 2-Nov-2024

Summary

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Official Symbol
col-36
Official Full Name
Cuticle collagen 36
Primary source
WormBase:WBGene00000613
Locus tag
CELE_C27H5.5
See related
AllianceGenome:WB:WBGene00000613
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. Human ortholog(s) of this gene implicated in cocaine dependence. Orthologous to human COL21A1 (collagen type XXI alpha 1 chain). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-36 in Genome Data Viewer
Location:
chromosome: II
Exon count:
2
Sequence:
Chromosome: II; NC_003280.10 (7167511..7168812, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Ferrochelatase Neighboring gene Transmembrane protein 180 Neighboring gene Intraflagellar transport protein 56 homolog Neighboring gene ncRNA Neighboring gene Glutamate-gated ChLoride channel

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification, sequence and expression patterns of the Caenorhabditis elegans col-36 and col-40 collagen-encoding genes. Levy AD, et al. Gene, 1993 Dec 31. PMID 8299960
  2. Differential gene expression of Caenorhabditis elegans grown on unmethylated sterols or 4alpha-methylsterols. Merris M, et al. J Lipid Res, 2007 May. PMID 17277379
  3. The cuticle of the nematode Caenorhabditis elegans: a complex collagen structure. Johnstone IL. Bioessays, 1994 Mar. PMID 8166670
  4. Analysis of mutations in the sqt-1 and rol-6 collagen genes of Caenorhabditis elegans. Kramer JM, et al. Genetics, 1993 Dec. PMID 8307321, Free PMC Article
  5. Structures and functions of collagens in Caenorhabditis elegans. Kramer JM. FASEB J, 1994 Mar 1. PMID 8143939

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cuticle collagen 36
NP_495487.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    7167511..7168812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063086.6 → NP_495487.1  Cuticle collagen 36 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_495487.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P34803
    Conserved Domains (1) summary
    smart01088
    Location:15 → 67
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P34803.1

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