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ctg-2 CRAL-TRIO domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 174360, updated on 2-Nov-2024

Summary

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Official Symbol
ctg-2
Official Full Name
CRAL-TRIO domain-containing protein
Primary source
WormBase:WBGene00011756
Locus tag
CELE_T13H5.2
See related
AllianceGenome:WB:WBGene00011756
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in cytoplasm. Orthologous to several human genes including SEC14L2 (SEC14 like lipid binding 2); SEC14L3 (SEC14 like lipid binding 3); and SEC14L4 (SEC14 like lipid binding 4). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ctg-2 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003280.10 (8515054..8516922)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Receptor-type tyrosine-protein phosphatase kappa;Receptor-type tyrosine-protein phosphatase mu;Tyrosine-protein phosphatase domain-containing protein Neighboring gene ncRNA Neighboring gene DB domain-containing protein Neighboring gene Ribonuclease H2 subunit A Neighboring gene Lipid scramblase CLPTM1L

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
CRAL-TRIO domain-containing protein
NP_001254156.1
  • Partially confirmed by transcript evidence
NP_001367210.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    8515054..8516922
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001267227.3 → NP_001254156.1  CRAL-TRIO domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254156.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22467
    Conserved Domains (2) summary
    smart00516
    Location:98 → 267
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    pfam01105
    Location:331 → 405
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD

  2. NM_001381528.1 → NP_001367210.1  CRAL-TRIO domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7WN92
    Conserved Domains (2) summary
    smart00516
    Location:86 → 255
    SEC14; Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p)
    pfam01105
    Location:319 → 393
    EMP24_GP25L; emp24/gp25L/p24 family/GOLD
Nucleotide Protein
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