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T01B7.5 Sas10 C-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 174395, updated on 2-Nov-2024

Summary

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Official Symbol
T01B7.5
Official Full Name
Sas10 C-terminal domain-containing protein
Primary source
WormBase:WBGene00011311
Locus tag
CELE_T01B7.5
See related
AllianceGenome:WB:WBGene00011311
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP3 (UTP3 small subunit processome component). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See T01B7.5 in Genome Data Viewer
Location:
chromosome: II
Exon count:
9
Sequence:
Chromosome: II; NC_003280.10 (8716828..8721688)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Ras-related protein Rab-21 Neighboring gene Secreted protein Neighboring gene Peptidyl-prolyl cis-trans isomerase 11 Neighboring gene TRansport of membrane to Cell Surface Neighboring gene Activin_recp domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrating interactome, phenome, and transcriptome mapping data for the C. elegans germline. Walhout AJ, et al. Curr Biol, 2002 Nov 19. PMID 12445390
  2. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of small-subunit processome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Sas10 C-terminal domain-containing protein
NP_001022291.1
  • Confirmed by transcript evidence
NP_001379438.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    8716828..8721688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001393139.1 → NP_001379438.1  Sas10 C-terminal domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q58AA7
    Conserved Domains (1) summary
    pfam09368
    Location:113 → 187
    Sas10; Sas10 C-terminal domain

  2. NM_001027120.3 → NP_001022291.1  Sas10 C-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022291.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q22046
    Conserved Domains (1) summary
    pfam09368
    Location:331 → 405
    Sas10; Sas10 C-terminal domain
Nucleotide Protein
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