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C18E9.7 Fibronectin type-III domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 174432, updated on 2-Nov-2024

Summary

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Official Symbol
C18E9.7
Official Full Name
Fibronectin type-III domain-containing protein
Primary source
WormBase:WBGene00007687
Locus tag
CELE_C18E9.7
See related
AllianceGenome:WB:WBGene00007687
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Orthologous to human TNXA (tenascin XA (pseudogene)) and TNXB (tenascin XB). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See C18E9.7 in Genome Data Viewer
Location:
chromosome: II
Exon count:
12
Sequence:
Chromosome: II; NC_003280.10 (8978475..8982783, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene SUZ domain-containing protein;Suppressor of zyg-1 protein 20 Neighboring gene uncharacterized protein Neighboring gene Mitochondrial import receptor subunit TOM40 homolog Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of cross-linked peptides from complex samples. Yang B, et al. Nat Methods, 2012 Sep. PMID 22772728
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Fibronectin type-III domain-containing protein
NP_001348641.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    8978475..8982783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001361871.2 → NP_001348641.1  Fibronectin type-III domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18096
    Conserved Domains (2) summary
    smart00060
    Location:424 → 497
    FN3; Fibronectin type 3 domain
    cd00063
    Location:529 → 607
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
Nucleotide Protein
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