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bath-38 BTB and MATH domain-containing protein 38 [ Caenorhabditis elegans ]

Gene ID: 174567, updated on 2-Nov-2024

Summary

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Official Symbol
bath-38
Official Full Name
BTB and MATH domain-containing protein 38
Primary source
WormBase:WBGene00009945
Locus tag
CELE_F52H3.3
See related
AllianceGenome:WB:WBGene00009945
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in several structures, including hypodermis and pharynx. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See bath-38 in Genome Data Viewer
Location:
chromosome: II
Exon count:
6
Sequence:
Chromosome: II; NC_003280.10 (10042780..10045270, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Procollagen-lysine,2-oxoglutarate 5-dioxygenase Neighboring gene SPK domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene FMRF-Like Peptide Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein Neighboring gene STarGazin (mammalian calcium channel) homolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
  2. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
BTB and MATH domain-containing protein 38
NP_496172.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    10042780..10045270 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063771.5 → NP_496172.1  BTB and MATH domain-containing protein 38 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496172.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q20681
    Conserved Domains (3) summary
    smart00225
    Location:229 → 322
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00651
    Location:228 → 322
    BTB; BTB/POZ domain
    cl02446
    Location:79 → 205
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q20681.1

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