U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

clec-61 VWFA domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 174613, updated on 2-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
clec-61
Official Full Name
VWFA domain-containing protein
Primary source
WormBase:WBGene00014047
Locus tag
CELE_ZK666.7
See related
AllianceGenome:WB:WBGene00014047
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in defense response to Gram-positive bacterium. [provided by Alliance of Genome Resources, Nov 2024]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See clec-61 in Genome Data Viewer
Location:
chromosome: II
Exon count:
7
Sequence:
Chromosome: II; NC_003280.10 (10488730..10490537, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene DUF4033 domain-containing protein Neighboring gene Na_H_antiporter domain-containing protein Neighboring gene non-specific serine/threonine protein kinase Neighboring gene Transcriptional regulator

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Studies on Shigella boydii infection in Caenorhabditis elegans and bioinformatics analysis of immune regulatory protein interactions. Kesika P, et al. Biochim Biophys Acta, 2012 Dec. PMID 22841995
  2. Caenorhabditis elegans mounts a p38 MAPK pathway-mediated defence to Cutibacterium acnes infection. Huang X, et al. Cell Microbiol, 2020 Oct. PMID 32543022
  3. Distinct pathogenesis and host responses during infection of C. elegans by P. aeruginosa and S. aureus. Irazoqui JE, et al. PLoS Pathog, 2010 Jul 1. PMID 20617181, Free PMC Article
  4. Specificity of the innate immune system and diversity of C-type lectin domain (CTLD) proteins in the nematode Caenorhabditis elegans. Schulenburg H, et al. Immunobiology, 2008. PMID 18406370
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in defense response to Gram-positive bacterium IGI
Inferred from Genetic Interaction
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
VWFA domain-containing protein
NP_496260.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    10488730..10490537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_063859.5 → NP_496260.1  VWFA domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496260.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q23565
    Conserved Domains (2) summary
    smart00034
    Location:240 → 388
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cl00057
    Location:32 → 219
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools