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pes-5 Patterned Expression Site [ Caenorhabditis elegans ]

Gene ID: 174819, updated on 2-Nov-2024

Summary

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Official Symbol
pes-5
Official Full Name
Patterned Expression Site
Primary source
WormBase:WBGene00003979
Locus tag
CELE_T27D12.4
See related
AllianceGenome:WB:WBGene00003979
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See pes-5 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003280.10 (11827930..11830020, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Ribonuclease H Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Patterned Expression Site
NP_001254317.1
  • Partially confirmed by transcript evidence;
    Product from WormBase gene class pes
NP_001359621.1
  • Product from WormBase gene class pes;
    Confirmed by transcript evidence
NP_001366978.1
  • Confirmed by transcript evidence;
    Product from WormBase gene class pes

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    11827930..11830020 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001373797.2 → NP_001359621.1  Patterned Expression Site [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F9UKU6

  2. NM_001267388.2 → NP_001254317.1  Patterned Expression Site [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254317.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EGM7

  3. NM_001381619.1 → NP_001366978.1  Patterned Expression Site [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EEB7
Nucleotide Protein
Heading Accession and Version

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