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clec-8 C-type LECtin [ Caenorhabditis elegans ]

Gene ID: 174893, updated on 28-Oct-2024

Summary

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Official Symbol
clec-8
Official Full Name
C-type LECtin
Primary source
WormBase:WBGene00012582
Locus tag
CELE_Y38E10A.4
See related
AllianceGenome:WB:WBGene00012582
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See clec-8 in Genome Data Viewer
Location:
chromosome: II
Exon count:
4
Sequence:
Chromosome: II; NC_003280.10 (12575691..12578061, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Cellulase Neighboring gene Intraflagellar transport protein 81 homolog Neighboring gene C-type LECtin Neighboring gene Homeobox domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation. Oh SW, et al. Nat Genet, 2006 Feb. PMID 16380712
  2. RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. LeGendre JB, et al. J Biol Chem, 2013 Jan 25. PMID 23195953, Free PMC Article
  3. Transcriptomics of ivermectin response in Caenorhabditis elegans: Integrating abamectin quantitative trait loci and comparison to the Ivermectin-exposed DA1316 strain. Dube F, et al. PLoS One, 2023. PMID 37141255, Free PMC Article
  4. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  5. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
C-type LECtin
NP_496687.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    12575691..12578061 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064286.6 → NP_496687.2  C-type LECtin [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496687.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9NAK6
    Conserved Domains (2) summary
    smart00034
    Location:23 → 152
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
    cd00041
    Location:303 → 413
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
Nucleotide Protein
Heading Accession and Version

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