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Y54G11A.7 Tetratricopeptide repeat protein 38 [ Caenorhabditis elegans ]

Gene ID: 175084, updated on 2-Nov-2024

Summary

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Official Symbol
Y54G11A.7
Official Full Name
Tetratricopeptide repeat protein 38
Primary source
WormBase:WBGene00013216
Locus tag
CELE_Y54G11A.7
See related
AllianceGenome:WB:WBGene00013216
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in hypodermis; intestine; nervous system; pharyngeal-intestinal valve; and pharynx. Orthologous to human TTC38 (tetratricopeptide repeat domain 38). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y54G11A.7 in Genome Data Viewer
Location:
chromosome: II
Exon count:
6
Sequence:
Chromosome: II; NC_003280.10 (14297305..14299620)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Tetratricopeptide repeat protein 38 Neighboring gene Peroxisomal catalase 1 Neighboring gene Catalase-2 Neighboring gene Catalase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Tetratricopeptide repeat protein 38
NP_496976.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    14297305..14299620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064575.7 → NP_496976.2  Tetratricopeptide repeat protein 38 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496976.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XW01
    Conserved Domains (1) summary
    cd05804
    Location:63 → 422
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
Nucleotide Protein
Heading Accession and Version

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