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trpp-11 Foie-gras_1 domain-containing protein;TRAPP II complex TRAPPC10 C-terminal domain-containing protein;Trafficking protein particle complex subunit 11 domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 175236, updated on 2-Nov-2024

Summary

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Official Symbol
trpp-11
Official Full Name
Foie-gras_1 domain-containing protein;TRAPP II complex TRAPPC10 C-terminal domain-containing protein;Trafficking protein particle complex subunit 11 domain-containing protein
Primary source
WormBase:WBGene00015173
Locus tag
CELE_B0412.3
See related
AllianceGenome:WB:WBGene00015173
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2S. Orthologous to human TRAPPC11 (trafficking protein particle complex subunit 11). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See trpp-11 in Genome Data Viewer
Location:
chromosome: III
Exon count:
17
Sequence:
Chromosome: III; NC_003281.10 (795136..809437)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Small ribosomal subunit protein uS14 Neighboring gene ncRNA Neighboring gene Dauer larva development regulatory growth factor daf-7 Neighboring gene Dachshund homolog dac-1 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of genes that protect the C. elegans genome against mutations by genome-wide RNAi. Pothof J, et al. Genes Dev, 2003 Feb 15. PMID 12600937, Free PMC Article
  2. An integrated strategy to study muscle development and myofilament structure in Caenorhabditis elegans. Meissner B, et al. PLoS Genet, 2009 Jun. PMID 19557190, Free PMC Article
  3. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
  4. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Foie-gras_1 domain-containing protein;TRAPP II complex TRAPPC10 C-terminal domain-containing protein;Trafficking protein particle complex subunit 11 domain-containing protein
NP_001309583.1
  • Confirmed by transcript evidence
NP_001309584.1
  • Confirmed by transcript evidence
NP_001309586.1
  • Confirmed by transcript evidence
NP_001368591.1
  • Confirmed by transcript evidence
NP_497264.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    795136..809437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001322633.2 → NP_001309583.1  Trafficking protein particle complex subunit 11 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MD37
    Conserved Domains (2) summary
    pfam11817
    Location:260 → 513
    Foie-gras_1; Foie gras liver health family 1
    pfam12584
    Location:973 → 1058
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

  2. NM_064863.7 → NP_497264.2  Trafficking protein particle complex subunit 11 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MBH5
    Conserved Domains (2) summary
    pfam11817
    Location:1 → 242
    Foie-gras_1; Foie gras liver health family 1
    pfam12584
    Location:702 → 787
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

  3. NM_001322637.3 → NP_001309584.1  TRAPP II complex TRAPPC10 C-terminal domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MBP2
    Conserved Domains (1) summary
    pfam12584
    Location:166 → 251
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

  4. NM_001381714.1 → NP_001368591.1  TRAPP II complex TRAPPC10 C-terminal domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MCR0
    Conserved Domains (1) summary
    pfam12584
    Location:3 → 41
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10

  5. NM_001322646.4 → NP_001309586.1  Foie-gras_1 domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A131MCW2
    Conserved Domains (1) summary
    pfam12584
    Location:5 → 32
    TRAPPC10; Trafficking protein particle complex subunit 10, TRAPPC10
Nucleotide Protein
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