Y119D3B.12 LUC7 related splicing factor homolog;Luc7-like protein 3 [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: Y119D3B.12
Official Full Name: LUC7 related splicing factor homolog;Luc7-like protein 3
Primary source: WormBase:WBGene00022489
Locus tag: CELE_Y119D3B.12
See related: AllianceGenome:WB:WBGene00022489
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splice site recognition. Predicted to be located in nucleus. Predicted to be part of U1 snRNP and U2-type prespliceosome. Orthologous to human LUC7L3 (LUC7 like 3 pre-mRNA splicing factor). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y119D3B.12 in Genome Data Viewer

Location:: chromosome: III

Exon count:: 7

Sequence:: Chromosome: III; NC_003281.10 (1202546..1207339)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

Y119D3_450.b (e-PCR)
- UniSTS:323870

Y119D3_450.d (e-PCR)
- UniSTS:324572

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables mRNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables mRNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in RNA splicing	IEA Inferred from Electronic Annotation more info
involved_in mRNA processing	IEA Inferred from Electronic Annotation more info
involved_in mRNA splice site recognition	IBA Inferred from Biological aspect of Ancestor more info
involved_in mRNA splice site recognition	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of U1 snRNP	IBA Inferred from Biological aspect of Ancestor more info
part_of U1 snRNP	IEA Inferred from Electronic Annotation more info
part_of U2-type prespliceosome	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: LUC7 related splicing factor homolog;Luc7-like protein 3

NP_001380070.1

Confirmed by transcript evidence

NP_001380071.1

Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

1202546..1207339

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001393275.1 → NP_001380071.1 Luc7-like protein 3 [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

Q8IAB4

Conserved Domains (1) summary

cl27291
Location:3 → 186

LUC7; LUC7 N_terminus
NM_001393276.1 → NP_001380070.1 LUC7 related splicing factor homolog [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

H2L0S8

Conserved Domains (1) summary

pfam03194
Location:3 → 263

LUC7; LUC7 N_terminus