rps-15A Ribosomal Protein, Small subunit [Caenorhabditis elegans] - Gene

Summary

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Official Symbol: rps-15A
Official Full Name: Ribosomal Protein, Small subunit
Primary source: WormBase:WBGene00004491
Locus tag: CELE_F53A3.3
See related: AllianceGenome:WB:WBGene00004491
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Caenorhabditis elegans (strain: Bristol N2)
Lineage: Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary: Predicted to be a structural constituent of ribosome. Involved in determination of adult lifespan. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in hypodermis; intestine; nervous system; and pharynx. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 20. Orthologous to human RPS15A (ribosomal protein S15a). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rps-15A in Genome Data Viewer

Location:: chromosome: III

Exon count:: 3

Sequence:: Chromosome: III; NC_003281.10 (1950660..1951424)

Chromosome III - NC_003281.10 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

F53A3.2 (e-PCR)
- UniSTS:312612

F53A3.3 (e-PCR)
- UniSTS:315888

Homology

Orthologs from OrthoDB

Gene Ontology Provided by WormBase

Function	Evidence Code	Pubs
enables structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in determination of adult lifespan	IGI Inferred from Genetic Interaction more info	PubMed
involved_in determination of adult lifespan	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of cytosolic small ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Ribosomal Protein, Small subunit

NP_001359806.1

Product from WormBase gene class rps;
Partially confirmed by transcript evidence

NP_001379589.1

Product from WormBase gene class rps;
Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003281.10 Reference assembly

Range

1950660..1951424

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001373852.4 → NP_001359806.1 Ribosomal Protein, Small subunit [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

A8WIR1

Conserved Domains (1) summary

cl00330
Location:3 → 101

Ribosomal_S8; Ribosomal protein S8
NM_001393289.1 → NP_001379589.1 Ribosomal Protein, Small subunit [Caenorhabditis elegans]

Status: REVIEWED

UniProtKB/TrEMBL

O17218

Conserved Domains (1) summary

PTZ00158
Location:1 → 130

PTZ00158; 40S ribosomal protein S15A; Provisional