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cone-1 Protein CASP [ Caenorhabditis elegans ]

Gene ID: 175372, updated on 2-Nov-2024

Summary

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Official Symbol
cone-1
Official Full Name
Protein CASP
Primary source
WormBase:WBGene00306126
Locus tag
CELE_Y54F10AM.16
See related
AllianceGenome:WB:WBGene00306126
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See cone-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
12
Sequence:
Chromosome: III; NC_003281.10 (2530620..2546421)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene WD_REPEATS_REGION domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 Neighboring gene Homeobox protein cut-like ceh-44 Neighboring gene ncRNA Neighboring gene Amyloid beta A4 precursor protein-binding family B member 2-like;Protein Fe65 homolog Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C30F12.4 influences oogenesis, fat metabolism, and lifespan in C. elegans. Wang L, et al. Protein Cell, 2016 Oct. PMID 27638466, Free PMC Article
  2. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
  3. Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly. Schaan Profes M, et al. PLoS Biol, 2024 Jan. PMID 38252619, Free PMC Article
  4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Protein CASP
NP_497575.2
  • Confirmed by transcript evidence
NP_497577.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    2530620..2546421
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065174.9 → NP_497575.2  Protein CASP [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497575.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8IA98
    Conserved Domains (2) summary
    pfam05087
    Location:122 → 231
    Rota_VP2; Rotavirus VP2 protein
    pfam08172
    Location:411 → 590
    CASP_C; CASP C terminal

  2. NM_065176.7 → NP_497577.2  Protein CASP [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497577.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8IA98, Q9BL01
    Conserved Domains (2) summary
    pfam05087
    Location:122 → 231
    Rota_VP2; Rotavirus VP2 protein
    pfam08172
    Location:411 → 592
    CASP_C; CASP C terminal
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8IA98.1

Gene LinkOut

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