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Y71H2B.2 Phosphorylated adapter RNA export protein [ Caenorhabditis elegans ]

Gene ID: 175382, updated on 2-Nov-2024

Summary

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Official Symbol
Y71H2B.2
Official Full Name
Phosphorylated adapter RNA export protein
Primary source
WormBase:WBGene00022192
Locus tag
CELE_Y71H2B.2
See related
AllianceGenome:WB:WBGene00022192
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable RNA binding activity. Predicted to be involved in snRNA export from nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human PHAX (phosphorylated adaptor for RNA export). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y71H2B.2 in Genome Data Viewer
Location:
chromosome: III
Exon count:
4
Sequence:
Chromosome: III; NC_003281.10 (2623170..2627749)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Lipoprotein Neighboring gene Serine/threonine-protein phosphatase 4 regulatory subunit ppfr-4 Neighboring gene ACB domain-containing protein Neighboring gene Matrix metalloproteinase-B Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
  
involved_in snRNA export from nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in snRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Phosphorylated adapter RNA export protein
NP_001367935.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    2623170..2627749
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001381783.2 → NP_001367935.1  Phosphorylated adapter RNA export protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N4E8
    Conserved Domains (1) summary
    pfam10258
    Location:200 → 283
    RNA_GG_bind; PHAX RNA-binding domain
Nucleotide Protein
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