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elmd-1 ELMO domain-containing protein;ELMO domain-containing protein C56G7.3 [ Caenorhabditis elegans ]

Gene ID: 175439, updated on 2-Nov-2024

Summary

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Official Symbol
elmd-1
Official Full Name
ELMO domain-containing protein;ELMO domain-containing protein C56G7.3
Primary source
WormBase:WBGene00008348
Locus tag
CELE_C56G7.3
See related
AllianceGenome:WB:WBGene00008348
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in ciliated neurons. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness and autosomal recessive nonsyndromic deafness 88. Orthologous to human ELMOD3 (ELMO domain containing 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See elmd-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
5
Sequence:
Chromosome: III; NC_003281.10 (3389919..3392525)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene E3 ubiquitin-protein ligase hecw-1 Neighboring gene tRNA-Lys Neighboring gene ncRNA Neighboring gene Myosin regulatory light chain Neighboring gene Conserved regulator of innate immunity protein 3 Neighboring gene Pre-mRNA cleavage complex subunit Clp1 C-terminal domain-containing protein;Protein clpf-1 Neighboring gene Nuclear Pore complex Protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. WDR31 displays functional redundancy with GTPase-activating proteins (GAPs) ELMOD and RP2 in regulating IFT complex and recruiting the BBSome to cilium. Cevik S, et al. Life Sci Alliance, 2023 Aug. PMID 37208194, Free PMC Article
  2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
ELMO domain-containing protein;ELMO domain-containing protein C56G7.3
NP_001299864.1
  • Confirmed by transcript evidence
NP_001299865.1
  • Confirmed by transcript evidence
NP_497699.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    3389919..3392525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065298.5 → NP_497699.1  ELMO domain-containing protein C56G7.3 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_497699.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q09292
    Conserved Domains (1) summary
    pfam04727
    Location:127 → 284
    ELMO_CED12; ELMO/CED-12 family

  2. NM_001312935.3 → NP_001299864.1  ELMO domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AU43
    Conserved Domains (1) summary
    pfam04727
    Location:90 → 248
    ELMO_CED12; ELMO/CED-12 family

  3. NM_001312936.3 → NP_001299865.1  ELMO domain-containing protein C56G7.3 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0K3AR87
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q09292.2

Gene LinkOut

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