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R10E4.11 C2H2-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 175554, updated on 2-Nov-2024

Summary

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Official Symbol
R10E4.11
Official Full Name
C2H2-type domain-containing protein
Primary source
WormBase:WBGene00011206
Locus tag
CELE_R10E4.11
See related
AllianceGenome:WB:WBGene00011206
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable chromatin insulator sequence binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in chromosome. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See R10E4.11 in Genome Data Viewer
Location:
chromosome: III
Exon count:
8
Sequence:
Chromosome: III; NC_003281.10 (4296517..4301039, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene DNA replication licensing factor mcm-5 Neighboring gene Endonuclease III homolog Neighboring gene DUF1996 domain-containing protein Neighboring gene GP-PDE domain-containing protein Neighboring gene Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase Neighboring gene Cnd1 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chromatin insulator sequence binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in chromosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
C2H2-type domain-containing protein
NP_001254910.1
  • Confirmed by transcript evidence
NP_001254911.1
  • Confirmed by transcript evidence
NP_001254912.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    4296517..4301039 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001267981.5 → NP_001254910.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254910.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q21907
    Conserved Domains (1) summary
    cd20908
    Location:227 → 277
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

  2. NM_001267982.3 → NP_001254911.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254911.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    D5MCP7

  3. NM_001267983.3 → NP_001254912.1  C2H2-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254912.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    D5MCP8
Nucleotide Protein
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