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Y54H5A.2 Protein HGH1 homolog [ Caenorhabditis elegans ]

Gene ID: 175699, updated on 2-Nov-2024

Summary

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Official Symbol
Y54H5A.2
Official Full Name
Protein HGH1 homolog
Primary source
WormBase:WBGene00021900
Locus tag
CELE_Y54H5A.2
See related
AllianceGenome:WB:WBGene00021900
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Orthologous to human HGH1 (HGH1 homolog). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y54H5A.2 in Genome Data Viewer
Location:
chromosome: III
Exon count:
7
Sequence:
Chromosome: III; NC_003281.10 (5137358..5149578, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene MOR2-PAG1_N domain-containing protein;Protein furry C-terminal domain-containing protein Neighboring gene T-box protein 2 Neighboring gene ncRNA Neighboring gene RNA-binding protein 42 Neighboring gene Glutamate-rich WD repeat-containing protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
  2. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Protein HGH1 homolog
NP_498089.2
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5137358..5149578 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065688.7 → NP_498089.2  Protein HGH1 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498089.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9BL64
    Conserved Domains (2) summary
    pfam04063
    Location:101 → 282
    DUF383; Domain of unknown function (DUF383)
    pfam04064
    Location:287 → 351
    DUF384; Domain of unknown function (DUF384)
Nucleotide Protein
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