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rbm-42 RNA-binding protein 42 [ Caenorhabditis elegans ]

Gene ID: 175700, updated on 2-Nov-2024

Summary

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Official Symbol
rbm-42
Official Full Name
RNA-binding protein 42
Primary source
WormBase:WBGene00021901
Locus tag
CELE_Y54H5A.3
See related
AllianceGenome:WB:WBGene00021901
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA binding activity and snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Orthologous to human RBM42 (RNA binding motif protein 42). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See rbm-42 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (5151907..5153229, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene T-box protein 2 Neighboring gene Protein HGH1 homolog Neighboring gene ncRNA Neighboring gene Glutamate-rich WD repeat-containing protein 1 Neighboring gene pseudo Neighboring gene putative cytosolic Fe-S cluster assembly factor oxy-4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. [FeFe]-hydrogenase-like gene is involved in the regulation of sensitivity to oxygen in yeast and nematode. Fujii M, et al. Genes Cells, 2009 Apr. PMID 19335616
  2. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Ceron J, et al. BMC Dev Biol, 2007 Apr 6. PMID 17417969, Free PMC Article
  3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  4. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  5. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
enables snRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RNA-binding protein 42
NP_498090.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5151907..5153229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065689.4 → NP_498090.1  RNA-binding protein 42 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498090.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N394
    Conserved Domains (1) summary
    cd12383
    Location:197 → 279
    RRM_RBM42; RNA recognition motif in RNA-binding protein 42 (RBM42) and similar proteins
Nucleotide Protein
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