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B0336.7 THAP-type domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 175792, updated on 18-Sep-2024

Summary

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Official Symbol
B0336.7
Official Full Name
THAP-type domain-containing protein
Primary source
WormBase:WBGene00015147
Locus tag
CELE_B0336.7
See related
AllianceGenome:WB:WBGene00015147
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Is expressed in intestine and neurons. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See B0336.7 in Genome Data Viewer
Location:
chromosome: III
Exon count:
6
Sequence:
Chromosome: III; NC_003281.10 (5694729..5697366, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene SH3 domain-containing protein Neighboring gene ARF7 effector protein C-terminal domain-containing protein Neighboring gene Transcription initiation factor IIA small chain homolog Neighboring gene Ubiquitin-like protein atg-12 Neighboring gene RGS domain-containing protein;Regulator of G-protein signaling rgs-5 Neighboring gene Protein SWAP;SURP motif domain-containing protein;Suppressor of white apricot N-terminal domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Prefoldin 6 mediates longevity response from heat shock factor 1 to FOXO in C. elegans. Son HG, et al. Genes Dev, 2018 Dec 1. PMID 30478249, Free PMC Article
  2. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
  3. Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network. Reece-Hoyes JS, et al. Mol Cell, 2013 Jul 11. PMID 23791784, Free PMC Article
  4. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
  5. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
THAP-type domain-containing protein
NP_001379553.1
  • Confirmed by transcript evidence
NP_498227.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    5694729..5697366 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_065826.4 → NP_498227.1  THAP-type domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_498227.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KY76
    Conserved Domains (1) summary
    smart00980
    Location:135 → 207
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion

  2. NM_001392106.1 → NP_001379553.1  THAP-type domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q5DX39
    Conserved Domains (1) summary
    smart00980
    Location:45 → 117
    THAP; The THAP domain is a putative DNA-binding domain (DBD) and probably also binds a zinc ion
Nucleotide Protein
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