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col-8 Cuticle collagen 8 [ Caenorhabditis elegans ]

Gene ID: 175981, updated on 2-Nov-2024

Summary

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Official Symbol
col-8
Official Full Name
Cuticle collagen 8
Primary source
WormBase:WBGene00000597
Locus tag
CELE_F11H8.3
See related
AllianceGenome:WB:WBGene00000597
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be a structural constituent of cuticle. Predicted to be part of collagen trimer. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See col-8 in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (7019583..7020600, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene non-specific serine/threonine protein kinase Neighboring gene Lipid-binding serum glycoprotein C-terminal domain-containing protein Neighboring gene Gamma-aminobutyric acid receptor subunit beta Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene NEDD8-activating enzyme E1 catalytic subunit Neighboring gene WAPL domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence comparisons of developmentally regulated collagen genes of Caenorhabditis elegans. Cox GN, et al. Gene, 1989. PMID 2753356
  2. Domain organization and intron positions in Caenorhabditis elegans collagen genes: the 54-bp module hypothesis revisited. Fields C. J Mol Evol, 1988 Dec-1989 Feb. PMID 3148742
  3. Genetic mapping of Caenorhabditis elegans collagen genes using DNA polymorphisms as phenotypic markers. Cox GN, et al. Genetics, 1985 Mar. PMID 3979813, Free PMC Article
  4. Molecular and biochemical aspects of nematode collagens. Cox GN. J Parasitol, 1992 Feb. PMID 1738051
  5. Molecular biology of the cuticle collagen gene families of Caenorhabditis elegans and Haemonchus contortus. Cox GN. Acta Trop, 1990 Jul. PMID 1978527

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables structural constituent of cuticle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cuticle collagen 8
NP_001370389.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    7019583..7020600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001382906.2 → NP_001370389.1  Cuticle collagen 8 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P18833, Q19359
    Conserved Domains (1) summary
    smart01088
    Location:4 → 56
    Col_cuticle_N; Nematode cuticle collagen N-terminal domain
Nucleotide Protein
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